JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FOSL1_chr11_65887049_65905388	0/0	c0003	816	98	52	4	41	0	1	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0004	816	7	6	1	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0005	816	3	1	1	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0006	816	1	1	0	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0007	816	1	1	0	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0008	816	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0009	816	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	c0010	816	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL2_chr2_28387858_28422317	1/1	c0001	981	356	79	76	147	10	42	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0002	981	2	2	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0003	1026	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0004	981	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0005	981	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0006	981	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0007	981	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	c0008	981	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOS_chr14_75273828_75287230	0/0	c0001	1143	259	59	49	108	10	33	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	1/1	c0002	1143	159	4	24	108	6	15	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	c0003	1143	14	14	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	c0004	1143	13	12	1	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	c0005	1143	1	1	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOXA1_chr14_37584552_37600249	0/1	c0001	1419	254	41	46	134	8	24	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	1/0	c0002	1419	120	51	24	27	5	12	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0003	1419	8	0	4	0	2	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0004	1419	3	0	2	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0005	1419	1	0	0	0	1	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0006	1419	1	1	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0007	1419	1	0	0	0	0	1	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0008	1419	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0009	1419	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0010	1419	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0011	1419	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0012	1419	1	1	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	c0013	1419	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA2_chr20_22575998_22589572	0/0	c0001	1392	241	47	47	101	12	34	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0002	1392	64	13	1	45	0	5	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0003	1392	42	32	4	6	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0004	1392	7	0	7	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0005	1392	4	4	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0006	1392	4	0	4	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0007	1392	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0008	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0009	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0010	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0011	1392	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0012	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0013	1392	1	0	1	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0015	1392	1	0	0	0	0	1	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	c0016	1392	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572