JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT1_chr18_35576740_35716834	0/0	c0002	1680	4	0	0	4	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	c0003	1680	4	4	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	c0004	1680	3	3	0	0	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	c0005	1680	1	0	0	1	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT2_chr1_230062238_230287122	1/1	c0001	1716	158	52	35	38	8	23	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0002	1716	64	11	16	34	0	3	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0003	1716	37	11	6	11	1	8	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0004	1716	32	0	4	24	0	4	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0005	1716	8	0	3	4	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0006	1716	5	5	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0007	1716	5	0	0	5	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0008	1716	5	5	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0009	1716	3	3	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0010	1716	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0011	1716	1	0	0	0	0	1	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0012	1716	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0013	1716	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0014	1716	1	0	0	0	1	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0015	1716	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	c0016	1716	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT3_chr2_165742588_165799247	1/1	c0001	1902	373	82	65	171	12	41	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0002	1902	4	4	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0003	1902	3	2	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0004	1902	1	0	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0005	1902	1	0	0	1	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0006	1902	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0007	1902	1	0	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0008	1902	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	c0009	1902	1	0	0	0	0	1	copy fasta	GALNT3	chr2	165742588	165799247
GALNT4_chr12_89514412_89529796	0/0	c0001	1737	213	43	30	112	3	25	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	1/0	c0002	1737	104	18	22	52	5	6	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0003	1737	75	19	14	35	2	5	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/1	c0004	1737	19	6	7	1	1	3	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0005	1737	7	6	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0006	1737	4	4	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0007	1737	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0008	1737	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0009	1737	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0010	1737	1	0	0	0	1	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0011	1737	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0012	1737	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0013	1737	1	0	0	0	0	1	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0014	1737	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0015	1737	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	c0016	1737	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT5_chr2_157252705_157323491	0/1	c0001	2823	164	21	39	79	5	19	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	1/0	c0002	2823	38	16	8	10	0	3	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0003	2823	20	15	3	0	0	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0004	2823	17	0	0	17	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0005	2823	13	13	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491