JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT5_chr2_157252705_157323491	0/0	c0006	2823	8	8	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0007	2823	8	0	0	8	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0008	2823	4	4	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0009	2823	3	3	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0010	2823	3	1	1	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0011	2823	2	2	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0012	2823	1	0	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	c0013	2823	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT6_chr12_51346252_51396406	1/1	c0001	1869	307	66	60	130	13	36	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0002	1869	54	5	11	35	0	3	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0003	1869	33	2	4	21	1	5	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0004	1869	9	9	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0005	1869	3	3	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0006	1869	3	3	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0007	1869	3	0	0	3	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0008	1869	2	1	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0010	1869	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0012	1869	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0013	1869	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0014	1869	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0015	1869	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0016	1869	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0017	1869	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0018	1869	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0019	1869	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0020	1869	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0021	1869	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	c0022	1869	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT7_chr4_173163811_173328967	0/0	c0001	1974	144	42	34	47	6	15	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	1/1	c0002	1974	84	30	19	21	4	8	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0003	1974	17	1	2	12	0	2	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0004	1974	5	5	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0005	1974	5	4	0	0	0	1	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0006	1974	3	3	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0007	1974	2	2	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0008	1974	1	0	0	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0009	1974	1	0	0	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0010	1974	1	0	1	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0011	1974	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0012	1974	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	c0013	1974	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT8_chr12_4715400_4777726	1/1	c0001	1914	186	36	36	80	6	26	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0002	1914	95	14	20	48	3	10	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0003	1914	10	10	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0004	1914	6	6	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0005	1914	6	6	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0006	1914	4	3	0	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0007	1914	3	0	2	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726