Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGXT2_chr5_34993102_35052949	0/0	c0019	1545	3	1	0	2	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0020	1545	3	0	0	3	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0021	1545	2	2	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0022	1545	2	2	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0023	1545	2	2	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0024	1545	2	0	1	0	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	1/0	c0025	1545	2	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0026	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0027	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0028	1545	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0029	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0030	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0031	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0032	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0033	1545	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0034	1545	1	0	1	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0035	1545	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0036	1545	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0037	1545	1	0	0	0	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0038	1545	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	c0039	1545	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT_chr2_240863824_240885500	1/1	c0001	1179	287	46	42	155	15	27	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0002	1179	74	24	7	36	1	6	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0003	1179	19	0	0	17	0	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0004	1179	17	3	10	0	2	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0005	1179	6	6	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0006	1179	5	0	2	3	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0007	1179	5	5	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0008	1179	3	2	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0009	1179	3	0	0	1	0	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0010	1179	2	2	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0011	1179	2	0	1	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0012	1179	2	0	2	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0013	1179	2	0	0	0	0	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0014	1179	2	2	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0015	1179	2	0	0	2	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0016	1179	2	1	0	0	0	1	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0017	1179	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0018	1179	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0019	1179	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0020	1179	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0021	1179	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0022	1179	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0023	1179	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0024	1179	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0025	1179	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0026	1179	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	c0027	1179	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AHCTF1_chr1_246834098_246936948	0/0	c0001	6801	124	19	15	79	3	8	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	1/0	c0002	6801	80	2	18	45	4	10	copy fasta	AHCTF1	chr1	246834098	246936948