Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHCTF1_chr1_246834098_246936948	0/1	c0003	6801	73	13	20	25	3	11	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0004	6801	27	22	3	0	0	2	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0005	6801	9	9	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0006	6801	7	6	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0007	6801	5	3	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0008	6801	3	1	1	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0009	6801	3	0	2	0	1	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0010	6801	3	0	0	3	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0011	6801	3	3	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0012	6801	2	2	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0013	6801	2	0	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0014	6801	2	0	1	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0015	6801	2	0	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0016	6801	2	2	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0017	6801	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0018	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0019	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0020	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0021	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0022	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0023	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0024	6801	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0025	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0026	6801	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0027	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0028	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0029	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0030	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0031	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0032	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0033	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0034	6801	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0035	6801	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0036	6801	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0037	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0038	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0039	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0040	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0041	6801	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0042	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0043	6801	1	0	0	0	1	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0044	6801	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	c0045	6801	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCYL1_chr1_109979765_110028742	1/1	c0001	1593	344	87	58	149	12	36	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	c0002	1593	2	0	0	0	0	2	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	c0003	1593	1	0	0	1	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	c0004	1593	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	c0005	1593	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL2_chr7_129220030_129435211	1/0	c0001	1836	199	56	42	67	8	25	copy fasta	AHCYL2	chr7	129220030	129435211