JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLYATL3_chr6_49494923_49533078	0/0	c0015	867	1	0	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0016	867	1	0	0	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0017	867	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0018	828	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0019	867	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0020	867	1	0	0	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYAT_chr11_58703757_58736943	0/1	c0001	891	212	69	38	77	9	18	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0002	891	88	15	16	49	1	7	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	1/0	c0003	891	45	0	7	32	0	5	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0004	891	5	0	0	5	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0005	891	3	3	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0006	891	3	0	0	3	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0007	891	2	2	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0008	891	1	0	1	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0009	891	1	0	0	0	0	1	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0010	891	1	1	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0011	891	1	1	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0012	891	1	0	0	0	0	1	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	c0013	891	1	1	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYCTK_chr3_52282828_52300257	1/1	c0001	1572	290	42	58	138	12	38	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0002	1572	49	35	9	0	3	2	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0003	1572	8	0	4	3	1	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0004	1572	3	2	1	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0005	1572	3	3	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0006	1572	2	2	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0007	1572	2	0	0	2	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0008	1572	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0014	1572	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0015	1572	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	c0016	1572	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYR1_chr16_4798203_4852288	0/1	c0001	1662	211	67	38	71	11	23	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	1/0	c0002	1662	136	24	23	68	7	13	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	c0003	1662	2	2	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	c0004	1662	1	0	0	1	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	c0005	1662	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	c0006	1662	1	0	1	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GM2A_chr5_151248185_151275440	0/0	c0001	582	163	53	23	70	4	13	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0002	582	93	5	18	52	4	14	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0003	582	57	26	3	26	0	2	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/1	c0004	582	40	1	1	30	1	6	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	1/0	c0005	582	26	8	8	0	4	5	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0006	582	14	0	3	2	1	8	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0007	582	9	1	0	6	0	2	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0008	582	5	0	0	5	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0009	582	2	0	2	0	0	0	copy fasta	GM2A	chr5	151248185	151275440