JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNA14_chr9_77418079_77653322	0/0	c0003	1068	9	0	4	3	0	2	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0004	1068	7	6	1	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0005	1068	7	5	1	0	0	1	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0006	1068	4	4	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0007	1068	3	3	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0008	1068	2	0	2	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0009	1068	2	2	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0010	1068	2	2	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0011	1068	2	2	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0012	1068	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0013	1068	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0014	1068	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0015	1068	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0016	1068	1	0	1	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0017	1068	1	0	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0018	1068	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	c0019	1068	1	0	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA15_chr19_3131033_3168749	1/1	c0001	1125	194	47	37	75	9	24	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0002	1125	172	21	22	109	4	16	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0003	1125	60	16	23	7	5	9	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0004	1125	6	6	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0005	1125	3	3	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0006	1125	3	0	0	3	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0007	1125	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0008	1125	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0009	1125	2	2	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0010	1125	1	1	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0011	1125	1	0	1	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0012	1125	1	0	0	0	0	1	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0013	1125	1	0	1	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0014	1125	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	c0015	1125	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNAI1_chr7_80129831_80231181	1/1	c0001	1065	223	45	55	81	11	29	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0002	1065	35	1	8	13	2	11	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0003	1065	25	23	2	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0004	1065	10	10	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0005	1065	10	10	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0006	1065	4	3	1	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0007	1065	3	3	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0008	1065	1	0	0	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI2_chr3_50231204_50264362	1/1	c0001	1068	323	87	59	130	15	30	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	c0002	1068	4	0	1	0	3	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	c0003	1068	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	c0004	1068	1	1	0	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	c0005	1068	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362
GNAI3_chr1_109543615_109605195	1/1	c0001	1065	305	89	49	123	8	34	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	c0002	1065	3	0	0	3	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	c0003	1065	1	0	1	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195