JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L24_chr15_28342851_28363084	0/0	c0005	2553	7	0	0	7	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0006	2517	6	1	0	5	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0007	2481	6	0	2	2	1	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0008	2502	5	0	3	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0009	2535	4	0	0	3	1	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0010	2517	4	1	1	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0011	2481	4	0	1	0	1	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0012	2499	3	0	1	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0013	2667	3	0	0	3	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0014	2481	3	0	0	0	0	3	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0015	2553	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0016	2499	2	1	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0017	2499	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0018	2499	2	0	0	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0019	2481	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0020	2476	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0021	2517	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0022	2517	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0023	2676	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0024	2517	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0025	2517	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0026	2517	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0027	2538	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0028	2517	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0029	2499	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0030	2499	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0031	2499	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0032	2499	1	0	0	0	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0033	2499	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0034	2499	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0035	2499	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0036	2382	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0037	2381	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0038	2382	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0039	2481	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0040	2481	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0041	2481	1	0	0	0	1	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0042	2481	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0043	2481	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0044	2502	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0045	2481	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0046	2481	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0047	2481	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0048	2481	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0049	2481	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L25_chr15_28548568_28568779	0/0	c0001	2481	18	1	10	0	6	1	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	c0002	2481	17	0	7	3	2	5	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	c0003	2481	14	0	7	0	3	4	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	c0004	2481	7	1	2	0	1	3	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	c0005	2481	5	0	2	0	0	3	copy fasta	GOLGA6L25	chr15	28548568	28568779