JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPIHBP1_chr8_143208218_143222170	0/0	c0001	555	35	24	2	4	0	5	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	1/0	c0002	555	21	5	4	9	1	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/1	c0003	555	17	9	1	4	1	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	c0004	555	17	1	4	7	2	3	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	c0005	555	15	15	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	c0006	544	1	0	1	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPI_chr19_34360196_34407413	1/0	c0001	1677	204	35	46	84	14	24	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0002	1677	59	25	3	25	1	5	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/1	c0003	1677	38	22	7	0	1	7	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0004	1677	6	0	4	0	2	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0005	1677	2	0	0	0	0	2	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0006	1677	2	2	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0008	1677	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	c0009	1677	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPKOW_chrX_49108407_49128735	1/1	c0001	1431	222	46	36	97	11	30	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0002	1431	32	26	6	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0003	1431	6	0	0	6	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0004	1431	6	0	6	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0005	1431	3	0	0	3	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0006	1431	2	0	0	2	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0007	1430	1	0	0	1	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0008	1432	1	0	0	1	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0010	1432	1	0	0	1	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPLD1_chr6_24420832_24494578	0/0	c0001	2523	68	5	8	49	1	5	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/1	c0002	2523	66	3	17	34	2	9	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0003	2523	40	15	11	6	1	7	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0004	2523	29	6	6	14	0	3	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0005	2523	29	0	3	20	0	6	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0006	2523	24	21	3	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0007	2523	19	0	10	9	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0008	2523	10	2	3	5	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0009	2523	8	8	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0010	2523	8	8	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0011	2523	6	0	0	6	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0012	2523	3	1	1	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0013	2523	2	1	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0014	2523	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0015	2523	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0016	2523	2	0	0	2	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0017	2523	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0018	2523	2	0	0	0	1	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0019	2523	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0020	2523	2	0	1	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0021	2523	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0022	2523	1	0	0	0	1	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0023	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0024	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578