JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPLD1_chr6_24420832_24494578	0/0	c0025	2523	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0026	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0027	2523	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0028	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0029	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0030	2523	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0031	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0032	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	1/0	c0033	2523	1	0	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0034	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0035	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0036	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0037	2523	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0038	2523	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0039	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0040	2523	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0041	2523	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0042	2523	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0043	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0044	2523	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0045	2523	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0046	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0047	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0048	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0049	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0050	2523	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	c0051	2523	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPM6A_chr4_175627937_175817264	1/1	c0001	837	264	75	59	92	6	30	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	c0002	837	6	1	1	0	0	4	copy fasta	GPM6A	chr4	175627937	175817264
GPM6B_chrX_13765939_13822093	1/1	c0001	987	317	63	56	160	8	28	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	c0002	987	5	5	0	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	c0003	987	4	0	1	0	3	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	c0004	987	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	c0005	987	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPN1_chr2_27624050_27656511	1/1	c0001	1125	344	66	63	161	14	38	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	c0002	1125	15	12	3	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	c0003	1125	2	2	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	c0004	1125	2	2	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	c0005	1125	2	0	0	2	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN2_chr1_26871132_26895283	0/1	c0001	933	219	64	46	67	12	29	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	1/0	c0002	933	21	2	10	0	4	4	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0003	933	5	5	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0004	933	4	0	0	3	0	1	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0005	933	2	2	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0006	933	2	2	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0007	933	2	0	0	0	0	2	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0008	933	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0009	933	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	c0010	933	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283