Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AK9_chr6_109487855_109696202	0/0	c0010	5736	4	4	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0011	5736	3	0	1	2	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0012	5736	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0013	5736	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0014	5736	3	0	0	3	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0015	5736	2	2	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0016	5736	2	0	1	0	1	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0017	5733	2	2	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0018	5736	1	1	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0019	5736	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0020	5736	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0021	5733	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0022	5736	1	0	1	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0023	5736	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0024	5736	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0025	5736	1	0	1	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0026	5736	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0027	5736	1	0	1	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0028	5736	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0029	5733	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0030	5736	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0031	5736	1	1	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0032	5733	1	1	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AKAIN1_chr18_5137911_5202257	1/1	c0001	210	346	60	51	182	12	39	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	c0002	210	74	36	21	10	4	3	copy fasta	AKAIN1	chr18	5137911	5202257
AKAP10_chr17_19899302_19982828	0/0	c0001	1989	127	50	31	24	8	14	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	1/1	c0002	1989	119	22	28	44	8	15	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0003	1989	19	0	0	19	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0004	1989	5	5	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0005	1989	2	2	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0006	1989	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0007	1989	1	0	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0008	1989	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0009	1989	1	0	0	0	0	1	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0010	1989	1	0	1	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	c0011	1989	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP11_chr13_42267152_42328261	1/1	c0001	5706	245	56	54	100	9	24	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0002	5706	38	1	5	26	3	3	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0003	5706	27	17	4	0	4	2	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0004	5706	17	1	0	15	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0005	5706	10	0	0	9	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0006	5706	4	0	2	0	0	2	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0007	5706	3	3	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0008	5706	3	0	0	3	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0009	5706	3	3	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0010	5706	3	0	1	2	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0011	5706	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0012	5706	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0013	5706	2	0	0	2	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0014	5706	2	0	2	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261