Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP11_chr13_42267152_42328261	0/0	c0015	5706	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0016	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0017	5706	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0018	5706	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0019	5706	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0020	5706	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0021	5706	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0022	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0023	5706	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0024	5706	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0025	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0026	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0027	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0028	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0029	5706	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	c0030	5706	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP12_chr6_151234967_151363559	1/0	c0001	5349	63	14	7	35	0	6	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0002	5352	62	2	10	39	4	7	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0003	5352	23	3	13	2	3	2	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0004	5352	18	3	3	11	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0005	5349	12	2	7	1	0	2	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0006	5352	10	9	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/1	c0007	5352	10	3	2	1	0	3	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0008	5352	8	0	0	8	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0009	5352	7	7	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0010	5352	7	7	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0011	5352	6	0	0	6	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0012	5352	4	0	0	4	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0013	5352	4	1	1	0	0	2	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0014	5352	3	3	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0015	5349	3	0	0	3	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0016	5349	3	3	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0017	5349	3	0	3	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0018	5352	3	0	2	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0019	5352	3	0	2	0	1	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0020	5349	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0021	5349	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0022	5349	2	0	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0023	5352	2	0	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0024	5352	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0025	5349	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0026	5352	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0027	5349	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0028	5352	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0029	5349	2	0	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0030	5349	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0031	5352	2	0	1	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0032	5349	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0033	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0034	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559