JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSX1_chr13_27787483_27799768	0/0	c0002	795	53	8	11	30	0	4	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	c0003	795	21	0	12	0	4	5	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	c0004	795	1	1	0	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	c0005	795	1	0	0	1	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	c0006	795	1	1	0	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX2_chr4_54095163_54107498	0/1	c0001	915	217	20	40	120	10	26	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	c0002	915	152	69	26	36	6	15	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	1/0	c0003	915	2	1	0	0	0	0	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	c0004	915	1	0	0	0	0	1	copy fasta	GSX2	chr4	54095163	54107498
GTDC1_chr2_143933068_144337512	0/0	c0001	1377	77	26	10	25	3	13	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	1/1	c0002	1377	26	9	3	5	3	4	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0003	1377	6	5	1	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0004	1377	3	3	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0005	1377	2	2	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0006	1377	2	2	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0007	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0008	1377	1	0	0	0	0	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0009	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0010	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0011	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0012	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0013	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTF2A1L_chr2_48612856_48684604	0/1	c0001	1437	243	62	48	93	9	30	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0002	1437	63	8	13	30	4	8	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0003	1437	18	17	1	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0004	1437	3	1	2	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	1/0	c0005	1437	3	0	0	0	1	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0006	1437	3	0	0	3	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0007	1437	2	0	2	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0008	1437	2	2	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0009	1437	1	0	0	0	0	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0011	1437	1	0	0	0	0	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0012	1437	1	0	0	1	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0013	1437	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0014	1437	1	0	0	0	0	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	c0015	1437	1	0	0	1	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1_chr14_81170452_81225959	1/1	c0001	1131	349	98	54	145	10	40	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	c0002	1131	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A2_chr15_59633062_59662515	1/1	c0001	330	435	89	86	194	18	46	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	c0002	343	1	1	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2B_chr1_88847633_88896567	0/1	c0001	951	355	83	68	154	12	37	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	1/0	c0002	951	11	10	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	c0003	951	3	3	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	c0004	951	2	0	0	2	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	c0005	951	1	0	0	0	0	1	copy fasta	GTF2B	chr1	88847633	88896567
GTF2E1_chr3_120737744_120788069	1/1	c0001	1320	283	76	55	99	14	37	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0002	1320	84	0	17	65	0	2	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0003	1320	4	3	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069