JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTF3C2_chr2_27320854_27361764	0/0	c0010	2736	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0011	2736	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C3_chr2_196758035_196804683	1/0	c0001	2661	200	67	55	43	12	22	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/1	c0002	2661	44	15	9	13	0	6	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	c0003	2661	3	0	0	3	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	c0004	2661	2	0	0	2	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	c0005	2661	1	0	0	1	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	c0006	2661	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	c0007	2661	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C4_chr9_132665464_132699953	0/1	c0001	2469	226	61	34	107	6	17	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	1/0	c0002	2469	180	23	35	90	9	22	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0003	2469	7	7	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0004	2469	6	0	4	0	1	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0005	2469	2	0	2	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0006	2469	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0007	2469	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0008	2469	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0009	2469	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0010	2469	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0011	2469	1	0	1	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	c0012	2469	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C5_chr9_133025997_133063503	1/1	c0001	1560	362	78	74	160	14	34	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0002	1560	6	6	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0003	1560	4	4	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0004	1560	2	0	0	2	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0005	1560	1	0	0	1	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0006	1560	1	1	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0007	1560	1	1	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0008	1560	1	0	1	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0009	1560	1	0	1	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	c0010	1560	1	0	0	1	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C6_chr6_110953706_110972872	1/1	c0001	642	332	85	67	131	10	37	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	c0002	642	12	0	3	6	0	3	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	c0003	642	1	0	0	1	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	c0004	642	1	1	0	0	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTPBP10_chr7_90341716_90396453	0/1	c0001	1164	201	29	44	89	5	33	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0002	1164	100	35	14	40	3	8	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0003	1164	48	11	4	29	0	4	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0004	1164	13	0	9	0	3	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0005	1164	10	9	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	1/0	c0006	1164	7	6	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0007	1164	4	1	2	0	1	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0008	1164	3	2	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0009	1164	3	3	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	c0010	1164	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP1_chr22_38700944_38738587	1/1	c0001	2010	316	65	56	141	12	40	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0002	2010	56	19	1	34	0	2	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0003	2010	4	4	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0004	2010	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0005	2010	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587