Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA4_chr1_93987834_94126148	0/0	c0088	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0089	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0090	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0091	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0092	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0093	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0094	6822	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0095	6822	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0096	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0097	6822	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0098	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0099	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0100	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0101	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0102	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0103	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0104	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0105	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0106	6822	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0107	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0108	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0109	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0110	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	0/1	c0001	4929	121	19	25	57	5	14	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0002	4929	98	17	14	49	4	14	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0003	4929	42	14	14	9	2	3	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0004	4929	19	12	5	0	1	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	1/0	c0005	4929	18	14	3	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0006	4929	9	0	3	6	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0007	4929	8	5	3	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0008	4929	7	0	2	0	2	3	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0009	4929	6	6	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0010	4929	4	4	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0011	4929	3	0	0	3	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0012	4929	2	0	0	2	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0013	4929	1	0	0	0	0	1	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0014	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0015	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0016	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0017	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0018	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0019	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0020	4929	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0021	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0022	4929	1	0	1	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0023	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0024	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	c0025	4929	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	0/1	c0001	4854	111	14	23	43	12	18	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0002	4854	91	11	10	55	3	12	copy fasta	ABCA6	chr17	69073702	69146895