JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-DRB1_chr6_32573775_32594848	0/0	c0019	801	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0020	801	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0021	801	3	1	1	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0022	801	3	3	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0023	801	3	2	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0024	801	3	1	2	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0025	801	2	0	0	0	0	2	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0026	801	2	2	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0027	801	2	0	1	0	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0028	801	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0029	801	1	0	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0030	801	1	0	0	0	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0031	801	1	0	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0032	801	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0033	801	1	0	0	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0034	801	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0035	801	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB5_chr6_32512353_32535287	1/0	c0001	801	12	0	0	6	0	5	copy fasta	HLA-DRB5	chr6	32512353	32535287
HLA-DRB5_chr6_32512353_32535287	0/0	c0002	801	7	0	0	4	0	3	copy fasta	HLA-DRB5	chr6	32512353	32535287
HLA-E_chr6_30484509_30499194	0/1	c0001	1077	206	57	38	70	8	32	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0002	1077	120	19	32	60	4	5	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0003	1077	116	7	7	94	1	7	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0004	1077	7	7	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0005	1077	3	0	0	3	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0006	1077	2	0	1	0	1	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	c0009	1038	1	0	0	1	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-F_chr6_29718434_29732296	0/1	c0001	1329	264	54	44	128	13	24	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0002	1329	114	22	11	62	1	18	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0003	1329	19	4	11	2	1	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0004	1329	19	0	5	14	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0005	1329	13	10	2	0	0	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0006	1329	4	0	0	4	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0007	1329	2	2	0	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0009	1329	1	0	0	1	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0011	1329	1	0	0	0	0	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0012	1329	1	0	0	0	1	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0013	1329	1	0	0	0	0	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0014	1329	1	1	0	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	c0015	1329	1	0	1	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-G_chr6_29822825_29836021	0/0	c0001	1017	158	30	46	70	5	7	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0002	1017	113	5	5	95	3	5	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0003	1017	94	14	21	43	6	10	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0004	1017	29	0	3	18	0	8	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0005	1017	24	14	4	3	1	2	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/1	c0006	1017	15	1	1	4	1	7	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0007	1017	13	12	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021