JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HNRNPCL2_chr1_13110488_13121854	0/0	c0009	882	4	0	3	0	1	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0010	879	3	3	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0011	882	3	0	0	3	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0012	882	3	0	2	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0013	882	3	2	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0014	882	2	0	1	0	0	1	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0015	882	2	0	1	0	1	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0016	882	1	0	0	0	0	1	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0017	882	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0018	882	1	1	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0019	882	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0020	882	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0021	882	1	0	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL3_chr1_13055769_13067878	0/0	c0001	882	111	2	31	67	7	4	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	c0002	882	3	0	1	0	2	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	c0003	882	2	0	0	1	1	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL4_chr1_13158914_13170631	0/0	c0001	882	105	15	32	44	4	10	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0002	882	58	6	10	34	1	7	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0003	882	28	1	5	18	3	1	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0004	882	8	3	1	4	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0005	881	4	0	1	3	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0006	882	4	0	0	4	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0007	882	1	0	0	1	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0008	882	1	0	1	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0009	881	1	0	1	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/1	c0010	882	1	0	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0011	882	1	1	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0012	882	1	0	1	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0013	882	1	1	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	c0014	882	1	1	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPC_chr14_21204147_21274442	1/1	c0001	882	384	89	72	163	14	44	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	c0002	882	3	3	0	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	c0003	882	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPDL_chr4_82417569_82435462	1/1	c0001	1263	341	91	57	139	14	38	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0002	1263	2	2	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0003	1263	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0004	1263	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0005	1263	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0006	1263	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	c0007	1263	1	0	1	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPD_chr4_82347498_82378991	1/1	c0001	1068	331	86	48	149	12	34	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	c0002	1081	1	0	0	1	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPF_chr10_43380618_43414186	1/1	c0001	1248	354	85	69	145	11	42	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	c0002	1248	3	0	0	3	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	c0003	1248	3	2	1	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	c0004	1248	3	3	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	c0005	1248	1	0	0	0	1	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPH1_chr5_179609178_179628671	1/1	c0001	1350	417	92	76	185	14	48	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	c0002	1350	8	0	0	8	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	c0003	1350	4	4	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671