JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXD8_chr2_176124705_176137695	0/0	c0010	873	2	0	0	2	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0011	860	1	0	0	1	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0012	873	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0013	873	1	0	0	1	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0014	873	1	0	1	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0015	873	1	0	0	0	0	1	copy fasta	HOXD8	chr2	176124705	176137695
HOXD9_chr2_176117719_176129937	1/0	c0001	1059	216	40	43	105	4	23	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/1	c0002	1062	142	6	30	83	7	15	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0003	1059	30	29	0	0	0	1	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0004	1059	4	4	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0005	1059	3	2	1	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0006	1059	2	0	0	0	0	2	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0008	1062	1	0	0	1	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0009	1059	1	0	0	0	1	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0010	1059	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0011	1062	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0012	1062	1	0	0	1	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	c0013	1059	1	0	0	0	0	1	copy fasta	HOXD9	chr2	176117719	176129937
HP1BP3_chr1_20735266_20792307	1/1	c0001	1662	366	90	64	153	15	42	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	c0002	1662	5	0	3	0	1	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	c0003	1662	3	3	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	c0004	1662	2	0	1	0	0	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	c0005	1662	1	0	0	1	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	c0006	1662	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HPCAL1_chr2_10297904_10432604	1/1	c0001	582	310	86	60	116	11	35	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	c0002	582	1	0	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	c0003	582	1	0	0	0	1	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	c0004	582	1	0	1	0	0	0	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL1_chr2_10297904_10432604	0/0	c0005	582	1	0	0	0	0	1	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL4_chr1_39673648_39696433	0/1	c0001	576	179	23	40	83	10	22	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0002	576	162	53	14	69	5	21	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	1/0	c0003	576	66	8	14	37	1	5	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0004	576	5	0	0	5	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0005	576	3	3	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0006	576	2	0	2	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0007	576	2	0	2	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	c0008	576	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCA_chr1_32881491_32899646	1/1	c0001	582	388	96	68	166	12	44	copy fasta	HPCA	chr1	32881491	32899646
HPDL_chr1_45321895_45333710	1/1	c0001	1116	389	93	73	164	18	39	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	c0002	1116	11	0	0	11	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	c0003	1116	6	5	1	0	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	c0004	1116	2	0	0	2	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	c0005	1116	1	0	0	0	0	1	copy fasta	HPDL	chr1	45321895	45333710
HPDL_chr1_45321895_45333710	0/0	c0006	1116	1	0	0	1	0	0	copy fasta	HPDL	chr1	45321895	45333710
HPD_chr12_121834527_121863859	0/1	c0001	1182	303	68	58	130	14	32	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	1/0	c0002	1182	68	7	18	37	2	3	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0003	1182	11	11	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0004	1182	7	0	4	3	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0005	1182	3	0	2	0	0	1	copy fasta	HPD	chr12	121834527	121863859