JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSDL1_chr16_84117141_84150177	0/0	c0003	993	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0004	993	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0005	993	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0006	993	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0007	993	1	0	0	0	0	1	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0008	993	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0009	993	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0010	993	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0011	993	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0012	993	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL2_chr9_112375108_112477405	1/1	c0001	1257	345	86	63	146	12	36	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	c0002	1257	20	0	0	20	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	c0003	1257	1	0	1	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSF1_chr8_144286604_144319720	1/0	c0001	1590	307	85	51	120	14	36	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/1	c0002	1590	12	0	2	4	0	5	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0003	1590	3	2	1	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0004	1590	2	0	2	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0006	1590	1	0	0	0	0	1	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0007	1590	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0008	1590	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0009	1590	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	c0010	1590	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF2BP_chr21_43524186_43664488	1/1	c0001	1005	2	0	0	0	0	0	copy fasta	HSF2BP	chr21	43524186	43664488
HSF2_chr6_122394652_122438119	1/1	c0001	1611	366	86	68	167	13	30	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	c0002	1611	13	0	0	13	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	c0003	1611	4	0	0	4	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	c0004	1611	2	0	2	0	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	c0005	1611	1	0	0	0	1	0	copy fasta	HSF2	chr6	122394652	122438119
HSF4_chr16_67159745_67174941	1/1	c0001	1479	264	92	54	66	10	40	copy fasta	HSF4	chr16	67159745	67174941
HSF4_chr16_67159745_67174941	0/0	c0002	1479	1	0	0	1	0	0	copy fasta	HSF4	chr16	67159745	67174941
HSF4_chr16_67159745_67174941	0/0	c0003	1490	1	0	0	1	0	0	copy fasta	HSF4	chr16	67159745	67174941
HSF5_chr17_58415167_58493408	1/1	c0001	1791	262	73	54	95	9	29	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0002	1791	57	0	12	37	3	5	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0003	1797	3	1	2	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0004	1791	2	2	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0005	1791	2	2	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0006	1791	1	0	0	0	0	1	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0007	1791	1	0	1	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0008	1791	1	0	0	1	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0009	1791	1	0	1	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0010	1791	1	0	0	1	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	c0011	1791	1	0	0	0	0	1	copy fasta	HSF5	chr17	58415167	58493408
HSFX1_chrX_149769068_149781867	0/0	c0001	1272	102	18	19	47	2	16	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0002	1272	88	26	18	30	2	12	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0003	1272	48	7	11	21	6	3	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0004	1272	2	0	0	2	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0006	1286	1	0	0	0	0	1	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0007	1272	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867