JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFI35_chr17_43001784_43019456	0/0	c0008	861	1	0	0	1	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0009	861	1	0	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0010	861	1	1	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0011	861	1	1	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0012	861	1	0	0	0	0	1	copy fasta	IFI35	chr17	43001784	43019456
IFI44L_chr1_78615448_78651145	1/1	c0001	1359	184	57	49	56	7	13	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0002	1359	98	11	20	52	5	10	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0003	1359	88	2	2	80	0	4	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0004	1359	21	0	2	18	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0005	1359	14	14	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0006	1359	8	3	2	0	0	3	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0007	1359	6	6	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0008	1347	2	2	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0009	1359	2	0	0	0	0	2	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0010	1359	2	2	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0014	1359	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	c0015	1359	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44_chr1_78644831_78669073	1/1	c0001	1335	358	75	56	170	16	39	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0002	1335	70	19	10	36	0	5	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0003	1335	3	1	0	0	0	2	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0004	1335	3	3	0	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0005	1335	3	0	0	3	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0006	1335	2	0	0	0	0	2	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0007	1335	2	0	0	2	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0008	1335	2	1	1	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0009	1335	1	0	0	0	0	1	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0010	1335	1	0	0	0	0	1	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0011	1335	1	0	0	1	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0012	1335	1	1	0	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	c0013	1335	1	0	1	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI6_chr1_27661064_27677192	1/1	c0001	393	354	94	62	132	18	46	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	c0002	393	1	1	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	c0003	393	1	1	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFIH1_chr2_162262074_162323684	1/1	c0001	3078	65	25	9	24	0	5	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0002	3078	63	14	18	14	5	12	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0003	3078	37	0	12	24	0	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0004	3078	25	21	4	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0005	3078	10	10	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0006	3078	7	1	2	0	3	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0007	3078	2	2	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0008	3078	2	2	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0009	3078	1	0	0	0	1	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0010	3078	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0011	3078	1	0	1	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0012	3078	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0013	3078	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0014	3078	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684