JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFIT3_chr10_89322997_89345968	0/0	c0010	1473	1	0	0	0	0	1	copy fasta	IFIT3	chr10	89322997	89345968
IFIT5_chr10_89409568_89425997	0/1	c0001	1449	269	50	36	150	8	24	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	1/0	c0002	1449	136	24	38	49	6	18	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0003	1449	8	8	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0004	1449	4	4	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0005	1449	2	2	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0006	1449	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	c0008	1449	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFITM10_chr11_1727406_1755595	1/1	c0001	687	381	78	69	176	14	42	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0002	687	12	10	2	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0003	687	4	2	2	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0004	687	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0005	687	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0006	687	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0007	687	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0008	687	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0009	687	1	0	1	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	c0010	687	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM1_chr11_309040_320272	0/1	c0001	378	33	6	16	0	6	4	copy fasta	IFITM1	chr11	309040	320272
IFITM1_chr11_309040_320272	1/0	c0002	378	1	0	0	0	0	0	copy fasta	IFITM1	chr11	309040	320272
IFITM2_chr11_302816_314395	1/0	c0001	399	17	1	9	0	5	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0002	399	7	1	3	0	2	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0003	399	3	0	1	0	1	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0004	399	2	0	2	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0005	399	2	0	1	0	0	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0006	399	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	c0007	399	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM3_chr11_314676_325860	1/0	c0001	402	29	2	14	0	8	4	copy fasta	IFITM3	chr11	314676	325860
IFITM3_chr11_314676_325860	0/0	c0002	402	2	2	0	0	0	0	copy fasta	IFITM3	chr11	314676	325860
IFITM5_chr11_293200_304526	0/0	c0001	399	277	75	44	126	4	28	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	1/1	c0002	399	146	21	32	60	12	19	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	c0003	399	7	0	1	5	0	1	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	c0004	399	1	1	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	c0005	399	1	0	0	1	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	c0006	399	1	1	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	c0007	399	1	0	1	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFNA10_chr9_21201181_21212143	1/0	c0001	570	250	47	57	96	8	41	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0002	570	130	27	22	74	5	2	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0003	570	27	3	0	23	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0004	570	14	0	0	14	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0005	570	6	0	0	6	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0006	570	4	0	3	0	1	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0007	570	4	4	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0008	570	4	4	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0009	570	3	2	1	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0010	570	2	2	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0011	570	2	2	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0012	570	2	0	1	0	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0013	570	1	0	0	1	0	0	copy fasta	IFNA10	chr9	21201181	21212143