JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IPO4_chr14_24175219_24193816	0/0	c0021	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0022	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0023	3246	1	0	0	0	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0024	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0025	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0026	3246	1	0	0	0	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0027	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0028	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0029	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0030	3246	1	0	1	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0031	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0032	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0033	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0034	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0035	3246	1	0	0	0	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0036	3246	1	0	1	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO5_chr13_97948675_98029296	1/1	c0001	3294	273	84	61	86	6	34	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0002	3294	63	0	3	53	0	7	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0003	3294	14	0	0	14	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0004	3294	9	0	0	9	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0005	3294	7	6	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0006	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0007	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0008	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0009	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0010	3294	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0011	3294	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0012	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0013	3294	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0014	3294	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0015	3294	1	0	0	0	0	1	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0016	3294	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0017	3294	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0018	3294	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	c0019	3294	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO7_chr11_9379652_9453127	0/1	c0001	3117	296	71	59	136	6	23	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	c0002	3117	9	0	1	0	2	6	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	1/0	c0003	3117	8	7	0	0	0	0	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	c0004	3117	1	0	0	0	0	1	copy fasta	IPO7	chr11	9379652	9453127
IPO8_chr12_30623988_30700869	0/0	c0001	3114	197	64	25	88	5	15	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	1/1	c0002	3114	165	16	40	76	7	24	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0003	3114	6	0	0	6	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0004	3114	2	0	1	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0005	3114	1	0	0	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0006	3114	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0007	3114	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0008	3114	1	0	0	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0009	3114	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	c0010	3114	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO9_chr1_201824157_201889291	1/1	c0001	3126	372	83	76	157	18	36	copy fasta	IPO9	chr1	201824157	201889291