JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IPO9_chr1_201824157_201889291	0/0	c0002	3126	6	0	0	6	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0003	3126	5	0	1	0	0	4	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0004	3126	4	3	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0005	3126	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0006	3126	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0007	3126	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0008	3126	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0009	3126	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0010	3126	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	c0011	3126	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPPK_chr9_92608183_92675131	1/1	c0001	1476	285	74	59	107	15	28	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0002	1476	23	1	3	13	1	5	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0003	1476	15	0	0	15	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0004	1476	7	1	3	0	0	3	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0005	1476	7	6	1	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0006	1476	3	0	0	3	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0007	1476	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0008	1476	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0009	1476	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPP_chr1_45693711_45755653	1/1	c0001	1755	78	58	11	3	0	4	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	c0002	1755	46	20	11	7	0	8	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	c0003	1755	2	2	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	c0004	1755	2	0	0	2	0	0	copy fasta	IPP	chr1	45693711	45755653
IQANK1_chr8_143729139_143795645	0/1	c0001	1683	103	5	12	66	3	16	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0002	1683	89	1	17	63	3	5	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0003	1683	38	36	1	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0004	1683	31	1	16	1	8	5	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0005	1683	16	3	1	8	1	3	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0006	1683	8	4	3	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0007	1683	8	8	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0008	1683	7	7	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0009	1683	6	5	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0010	1683	4	4	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0011	1683	4	4	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0012	1686	3	2	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0013	1683	3	0	0	0	0	3	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0014	1683	2	0	0	0	0	2	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0015	1683	2	0	1	0	1	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0016	1686	2	1	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0017	1683	2	2	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0018	1683	2	0	2	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0019	1683	2	0	1	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0020	1683	2	0	0	0	0	2	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0021	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0022	1683	1	0	0	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0023	1683	1	0	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0024	1683	1	0	0	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0025	1683	1	0	0	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0026	1683	1	0	0	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645