JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGB5_chr3_124756948_124892365	0/0	c0019	2400	1	0	0	0	1	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0020	2400	1	0	0	0	0	1	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0021	2400	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0022	2400	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0023	2400	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0024	2391	1	0	0	0	0	1	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0025	2391	1	0	0	0	0	1	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0026	2400	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB6_chr2_160094671_160205272	1/0	c0001	2367	134	58	18	36	6	15	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0002	2367	78	1	15	55	2	5	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0003	2367	69	16	15	29	2	7	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0004	2367	38	0	0	30	0	8	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/1	c0005	2367	18	1	10	1	4	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0006	2367	5	5	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0007	2367	2	0	0	2	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0008	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0009	2367	1	0	0	0	0	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0010	2367	1	0	0	0	0	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0011	2367	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0012	2367	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0013	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0014	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0015	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0016	2367	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0017	2367	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0018	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0019	2367	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0020	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	c0021	2367	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB7_chr12_53186323_53212251	1/1	c0001	2397	350	74	56	167	9	42	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0002	2397	10	10	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0003	2397	7	2	2	0	0	3	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0004	2397	4	0	0	4	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0005	2397	3	0	0	3	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0006	2397	3	0	3	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0007	2397	3	0	1	0	1	1	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0008	2397	2	0	2	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0009	2397	2	2	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0010	2397	2	2	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0011	2397	2	0	0	2	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0012	2397	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0013	2397	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0014	2397	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0015	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0016	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0017	2397	1	0	0	1	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0018	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0019	2397	1	0	0	1	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0020	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0021	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251