JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM4E_chr11_95020258_95032596	0/0	c0025	1521	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0026	1521	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0027	1521	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4F_chr11_95044422_95056338	1/1	c0001	1917	376	70	70	174	14	46	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0002	1917	14	0	1	13	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0003	1917	13	11	2	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0004	1917	5	0	0	5	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0005	1917	4	4	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0006	1917	3	3	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0007	1917	3	3	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0008	1917	2	0	0	2	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0009	1917	2	0	0	0	2	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0010	1917	2	2	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0012	1917	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0013	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0014	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0015	1917	1	0	0	0	0	1	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0016	1906	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0017	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0018	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0019	1917	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0020	1917	1	0	1	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0021	1917	1	0	1	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0022	1917	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0023	1917	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0024	1917	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0025	1917	1	0	1	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	c0026	1917	1	0	0	0	0	1	copy fasta	KDM4F	chr11	95044422	95056338
KDM5A_chr12_275057_394320	1/1	c0001	5073	162	52	33	51	4	20	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0002	5073	145	21	28	83	4	9	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0003	5073	12	0	0	12	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0004	5073	5	4	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0005	5073	3	2	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0006	5073	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0007	5073	3	0	0	3	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0008	5073	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0009	5073	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0010	5073	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0011	5073	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0012	5073	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0013	5073	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0014	5073	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0015	5073	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0016	5073	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0017	5073	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0018	5073	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0019	5073	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0020	5073	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	c0021	5059	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320