JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA2026_chr9_5914022_6013482	0/0	c0048	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KICS2_chr12_64186080_64227296	0/1	c0001	1338	394	77	76	180	18	42	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	c0002	1338	7	7	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	c0003	1338	3	3	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	c0004	1338	2	2	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	1/0	c0005	1338	1	0	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	c0006	1338	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KIDINS220_chr2_8723858_8842613	1/1	c0001	5316	158	54	31	46	9	16	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0002	5316	95	26	17	40	3	9	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0003	5316	40	0	5	32	1	2	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0004	5316	12	0	2	0	5	5	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0005	5316	6	5	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0006	5316	4	4	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0007	5316	2	0	0	2	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0008	5316	2	0	0	2	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0009	5316	2	0	0	0	0	2	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0010	5316	2	2	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0011	5316	1	0	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0012	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0013	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0014	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0015	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0016	5316	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0017	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0018	5316	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0019	5316	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0020	5316	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	c0021	5316	1	0	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIF11_chr10_92588130_92660395	1/1	c0001	3171	335	81	66	132	14	40	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0002	3171	6	5	1	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0003	3171	3	0	0	3	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0004	3171	1	0	1	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0005	3171	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0006	3171	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0007	3171	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0008	3149	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0009	3171	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0010	3171	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	c0011	3171	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF12_chr9_114086638_114104292	1/1	c0001	1956	366	65	67	179	15	38	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0002	1956	24	9	9	0	2	4	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0003	1956	9	8	1	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0004	1956	6	0	0	6	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0005	1956	4	0	2	0	1	1	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0006	1956	4	4	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0007	1956	3	3	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0008	1956	3	3	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0009	1956	1	1	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0010	1956	1	0	1	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0011	1956	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292