JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHDC9_chr1_161093361_161105346	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHL10_chr17_41832825_41853384	0/1	c0001	1827	295	74	50	131	11	28	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	1/0	c0002	1827	80	19	16	31	3	10	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0003	1827	12	0	10	0	0	2	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0004	1827	1	1	0	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0005	1827	1	1	0	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0006	1827	1	0	0	1	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0007	1827	1	0	1	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0008	1827	1	1	0	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0009	1827	1	0	0	1	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	c0010	1827	1	0	1	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL11_chr17_41843518_41870423	0/1	c0001	2127	275	62	60	107	9	36	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	1/0	c0002	2127	79	20	14	33	2	9	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0003	2127	3	2	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0004	2127	3	0	2	0	1	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0005	2127	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0006	2127	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0007	2127	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0008	2127	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0009	2127	1	0	1	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	c0010	2127	1	0	1	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL12_chr1_202886120_202932234	1/0	c0001	1707	232	69	40	91	6	25	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/1	c0002	1707	124	9	22	79	2	11	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	c0003	1718	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	c0004	1707	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL13_chrX_117892813_118121810	1/1	c0001	1920	136	9	19	79	7	20	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0002	1920	47	42	3	0	0	2	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0003	1920	13	12	1	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0004	1920	5	2	3	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0005	1920	2	1	1	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0006	1920	1	1	0	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0007	1920	1	1	0	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0008	1920	1	0	0	1	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	c0009	1920	1	0	0	1	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL14_chr18_32667673_32778023	1/1	c0001	1887	120	61	33	22	1	1	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0002	1887	57	16	16	18	1	6	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0003	1887	15	11	2	0	0	2	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0004	1887	2	1	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0005	1887	2	0	0	2	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0006	1887	1	0	0	1	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0007	1887	1	0	0	1	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0008	1887	1	0	0	0	0	1	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0009	1887	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0010	1887	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0011	1887	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0012	1887	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	c0013	1887	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL15_chrX_23978720_24032186	1/1	c0001	1815	280	62	58	122	9	27	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	c0002	1824	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	c0003	1815	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186