JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL4_chrX_87512802_87675050	0/0	c0004	2157	9	8	1	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	c0005	2157	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL5_chr4_39057232_39131233	1/0	c0001	2130	177	53	31	76	3	13	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/1	c0002	2130	119	22	20	61	3	12	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0003	2130	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0004	2130	1	0	0	0	0	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0005	2130	1	0	1	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0006	2130	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0007	2130	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0008	2130	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	c0009	2130	1	0	0	1	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL6_chr3_183482551_183560706	0/0	c0001	1866	116	30	18	55	4	9	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	1/1	c0002	1866	73	8	27	21	4	11	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0003	1866	33	4	2	22	0	5	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0004	1866	16	12	4	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0005	1866	9	0	4	1	2	2	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0006	1866	5	0	0	5	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0007	1866	5	5	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0008	1866	5	4	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0009	1866	5	5	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0010	1866	5	5	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0011	1866	5	0	0	5	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0012	1866	3	0	3	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0013	1866	3	0	0	3	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0014	1866	3	2	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0015	1866	3	3	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0016	1866	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0017	1866	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0018	1866	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0019	1866	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0020	1866	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	c0021	1866	1	0	0	0	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL7_chr7_23100785_23182914	1/1	c0001	1761	156	24	32	74	5	19	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0002	1761	153	47	25	64	4	13	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0003	1761	7	7	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0004	1761	4	4	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0005	1761	4	3	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0006	1761	1	0	0	0	1	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0007	1761	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0008	1761	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	c0009	1761	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL8_chr4_87155103_87225618	1/1	c0001	1863	317	82	59	126	16	32	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	c0002	1863	43	4	3	28	2	6	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	c0003	1863	2	2	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	c0004	1863	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	c0005	1863	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL9_chr9_21324665_21340404	1/1	c0001	1854	419	89	74	198	17	39	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0002	1854	4	0	3	0	1	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0003	1854	2	1	1	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0004	1854	2	0	0	2	0	0	copy fasta	KLHL9	chr9	21324665	21340404