JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMPD3_chr11_10450264_10512579	0/0	c0020	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0021	2304	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0022	2304	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0023	2304	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0024	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPH_chr7_38378704_38636373	1/1	c0001	2088	162	28	32	60	9	31	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0002	2088	34	1	13	14	2	4	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0003	2088	23	20	3	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0004	2088	19	0	2	14	0	3	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0005	2088	11	8	3	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0006	2088	10	10	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0007	2088	8	0	3	4	1	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0008	2088	7	0	0	7	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0009	2088	4	0	1	0	1	2	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0010	2088	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0011	2088	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0012	2088	1	0	1	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0013	2088	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0014	2088	1	0	0	0	1	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0015	2088	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0016	2088	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0017	2088	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0018	2088	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	c0019	2088	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMTN_chr4_70513569_70537743	1/0	c0001	630	193	63	25	82	8	14	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/1	c0002	630	121	19	37	47	3	14	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0003	630	67	2	7	44	3	11	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0004	630	57	0	5	46	1	5	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0005	630	8	6	1	0	0	1	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0006	630	3	2	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0007	630	2	0	0	2	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0008	630	2	0	0	0	1	1	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0009	630	1	0	0	1	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0010	630	1	0	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0011	630	1	1	0	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0012	630	1	0	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	c0013	630	1	1	0	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMT_chr3_49411778_49427473	1/1	c0001	1212	266	71	49	107	10	27	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0002	1212	79	18	22	22	8	9	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0003	1212	4	0	4	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0004	1212	2	0	0	2	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0005	1212	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0006	1212	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0007	1212	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0008	1212	1	0	1	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0010	1212	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	c0011	1212	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMY1A_chr1_103650760_103669554	0/0	c0001	1536	211	39	30	103	5	34	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0002	1536	2	0	0	2	0	0	copy fasta	AMY1A	chr1	103650760	103669554