JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMY1A_chr1_103650760_103669554	0/0	c0003	1536	2	0	0	2	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0004	1536	2	0	0	0	0	2	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0005	1536	1	0	0	0	0	1	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0006	1536	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0007	513	1	0	0	0	0	1	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0008	1536	1	0	0	0	1	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0010	1536	1	0	1	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0011	1536	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0012	1536	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0013	1536	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0015	1536	1	0	1	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0016	1536	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	c0017	1536	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1B_chr1_103682415_103701210	0/0	c0001	1536	151	35	31	68	2	15	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0002	1536	2	0	0	0	0	2	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0003	1536	1	1	0	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0004	1536	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0005	1536	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0006	1536	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0007	1536	1	0	0	0	0	1	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0008	1536	1	0	0	1	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1C_chr1_103744898_103763692	0/0	c0001	1536	328	77	65	138	9	39	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0002	1536	3	0	1	0	0	2	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0003	1536	3	0	0	0	0	3	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0004	1536	2	2	0	0	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0005	1536	1	0	0	1	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0006	1536	1	0	0	0	1	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0007	1536	1	1	0	0	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	c0008	1536	1	0	0	1	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY2A_chr1_103612427_103630780	1/1	c0001	1536	177	14	37	106	5	13	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0002	1536	53	30	14	1	3	5	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0003	1536	44	3	6	25	1	9	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0004	1536	10	9	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0005	1536	8	7	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0006	1536	3	0	2	0	0	1	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0007	1536	2	2	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0008	1536	2	1	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0009	1536	2	0	0	2	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0010	1536	1	0	0	0	1	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0011	1536	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0013	1536	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0014	1566	1	0	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0015	1536	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0016	1536	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0017	1536	1	0	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	c0018	1536	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780