JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LBX1_chr10_101221994_101234463	0/0	c0004	846	1	0	0	1	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX2_chr2_74492517_74504603	0/0	c0001	597	213	84	50	38	14	27	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/1	c0002	597	122	7	21	80	2	11	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	1/0	c0003	597	8	1	4	0	0	2	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0004	597	5	5	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0005	597	4	0	4	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0006	597	2	0	1	1	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0007	597	2	0	0	2	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0008	597	1	1	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	c0009	597	1	0	0	1	0	0	copy fasta	LBX2	chr2	74492517	74504603
LCA5L_chr21_39400728_39450778	1/0	c0001	2013	252	33	48	132	11	27	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/1	c0002	2013	76	50	14	5	3	3	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0003	2013	2	2	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0004	2013	2	2	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0005	2013	2	0	2	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0006	2013	2	0	2	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0007	2013	1	0	0	1	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0008	2013	1	0	0	1	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0009	2013	1	0	0	1	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	c0010	2013	1	1	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5_chr6_79479991_79542430	0/1	c0001	2094	201	34	34	96	7	29	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0002	2094	72	11	12	43	1	5	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0003	2094	67	27	8	28	2	2	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	1/0	c0004	2094	32	6	12	5	4	4	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0005	2094	11	11	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0006	2094	5	0	0	4	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0007	2094	2	2	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0008	2094	2	2	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0009	2094	1	0	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0010	2094	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0011	2094	1	0	0	0	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0012	2094	1	0	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0013	2094	1	0	0	0	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0014	2094	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0015	2094	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	c0016	2094	1	0	0	0	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCAT_chr16_67934750_67949120	1/1	c0001	1323	277	78	53	101	5	38	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0002	1323	17	11	5	0	1	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0003	1323	3	3	0	0	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0004	1323	3	1	2	0	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0005	1323	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0006	1323	1	1	0	0	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0007	1323	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	c0008	1323	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCE1A_chr1_152822473_152833097	1/0	c0001	333	394	75	75	187	12	44	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	c0002	333	16	15	1	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	c0003	333	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	c0004	333	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	c0005	333	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/1	c0006	333	1	0	0	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097