JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCE1B_chr1_152806971_152818108	1/1	c0001	357	420	79	72	214	11	42	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0002	357	9	9	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0003	357	7	0	4	0	1	2	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0004	357	1	1	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0005	357	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0006	357	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	c0007	333	1	1	0	0	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1C_chr1_152799832_152811651	1/1	c0001	357	253	52	32	135	7	25	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	c0002	357	107	21	18	53	1	14	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	c0003	357	56	18	19	10	6	3	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	c0004	357	3	3	0	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	c0005	357	2	0	0	2	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	c0006	357	1	0	1	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1D_chr1_152791721_152803181	1/0	c0001	345	237	41	50	116	9	20	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0002	345	100	18	16	53	1	12	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/1	c0003	345	17	3	1	9	0	3	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0004	345	9	9	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0005	345	6	6	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0006	333	4	4	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0007	345	2	0	0	2	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0008	345	2	2	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0009	345	1	0	0	0	0	1	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0010	345	1	1	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	c0011	345	1	0	1	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1E_chr1_152781257_152793426	1/0	c0001	357	175	20	29	97	5	23	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/1	c0002	357	134	30	20	71	1	11	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0003	357	56	24	16	6	5	5	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0004	357	13	0	2	10	0	1	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0005	357	12	12	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0006	357	5	0	3	0	1	1	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0007	357	5	5	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0008	357	4	4	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0009	357	2	0	0	2	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0010	357	2	2	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0011	357	1	0	0	0	0	1	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	c0012	357	1	1	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1F_chr1_152770140_152782024	1/1	c0001	357	364	93	63	165	13	28	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0002	375	38	2	8	21	1	6	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0003	357	21	0	8	5	2	6	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0004	357	4	0	0	4	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0005	342	4	4	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0006	357	3	0	0	3	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0007	357	2	0	2	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0008	381	1	0	1	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	c0009	357	1	1	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE2A_chr1_152693345_152704442	1/1	c0001	321	382	74	78	180	14	34	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	c0002	321	20	20	0	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	c0003	321	2	0	2	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	c0004	321	1	0	0	1	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	c0005	321	1	0	0	1	0	0	copy fasta	LCE2A	chr1	152693345	152704442