JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCN2_chr9_128144453_128158453	0/0	c0003	597	2	2	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	c0004	597	1	1	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	c0005	597	1	0	0	1	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	c0006	597	1	1	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN6_chr9_136739017_136753525	1/1	c0001	492	366	85	78	138	15	48	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0002	492	13	13	0	0	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0003	492	5	0	0	4	1	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0004	492	5	0	0	5	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0005	492	3	0	0	3	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0006	492	2	0	1	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0007	492	1	0	1	0	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	c0008	492	1	0	0	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN8_chr9_136749386_136763243	1/1	c0001	459	310	75	55	121	17	40	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0002	459	45	10	13	18	1	3	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0003	459	4	3	1	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0004	459	3	3	0	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0005	459	2	1	1	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0006	459	1	0	0	0	0	1	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0007	459	1	1	0	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0008	459	1	1	0	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	c0009	459	1	0	0	1	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN9_chr9_135658309_135671961	1/1	c0001	474	387	80	73	169	16	47	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0002	474	7	0	0	7	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0003	474	7	7	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0004	474	6	0	0	6	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0005	474	3	3	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0006	474	2	1	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0007	474	2	1	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0008	474	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0009	474	1	0	0	0	0	1	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0010	474	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0011	474	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0012	474	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0013	474	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0014	474	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0015	474	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0016	474	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	c0017	474	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCNL1_chr9_136977993_136990758	1/1	c0001	495	277	62	46	121	10	36	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0002	495	88	17	22	33	4	12	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0003	514	5	4	1	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0004	514	5	4	1	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0005	495	3	3	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0006	495	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0007	495	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0008	495	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	c0009	533	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCORL_chr4_17836187_18026755	1/1	c0001	5616	104	30	14	44	1	13	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0002	5613	77	16	17	37	1	6	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0003	5616	37	6	10	16	0	5	copy fasta	LCORL	chr4	17836187	18026755