JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LCORL_chr4_17836187_18026755	0/0	c0004	5616	18	0	0	12	0	6	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0005	5616	12	12	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0006	5616	6	6	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0007	5616	5	3	1	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0008	5616	3	1	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0009	5616	3	0	0	3	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0010	5616	3	0	2	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0011	5616	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0012	5616	2	0	0	0	2	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0013	5613	2	0	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0014	5616	2	0	0	0	0	2	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0015	5616	2	0	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0016	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0017	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0018	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0019	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0020	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0021	5616	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0022	5616	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0023	5613	1	0	0	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0024	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0025	5616	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0026	5613	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0027	5616	1	0	0	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0028	5616	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	c0029	5616	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCOR_chr10_96827298_97000956	1/1	c0001	4674	129	35	29	47	3	13	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0002	4674	57	11	5	33	1	7	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0003	4674	33	0	2	27	0	4	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0004	4674	22	1	3	13	0	5	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0005	4674	9	8	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0006	4674	5	5	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0007	4674	5	5	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0008	4674	4	2	2	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0009	4674	3	3	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0010	4674	3	0	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0011	4674	3	0	1	0	0	2	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0012	4674	3	0	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0013	4674	2	2	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0014	4674	2	0	0	2	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0015	4674	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0016	4674	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0017	4674	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0018	4674	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0019	4674	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0020	4674	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0021	4674	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	c0022	4674	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCP1_chr13_46120923_46187177	0/1	c0001	1884	310	61	59	142	12	35	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	1/0	c0002	1884	44	20	12	10	1	0	copy fasta	LCP1	chr13	46120923	46187177