JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LHFPL7_chr22_24930098_24951694	1/1	c0001	603	380	80	71	174	12	41	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	c0002	603	27	3	3	18	0	3	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	c0003	603	6	6	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	c0004	603	6	6	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	c0005	603	1	1	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHPP_chr10_124456823_124619141	0/1	c0001	813	213	36	47	81	11	37	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	1/0	c0002	813	25	1	8	7	3	5	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	c0003	813	18	17	1	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	c0004	813	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	c0005	813	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	c0006	813	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	c0007	813	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHX1_chr17_36932475_36949612	0/1	c0001	1221	370	74	69	166	12	48	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0002	1221	5	5	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0003	1221	4	3	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0004	1221	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0005	1221	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	c0008	1207	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX2_chr9_124006768_124038301	1/1	c0001	1221	258	79	41	104	8	24	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0002	1221	120	20	26	56	3	15	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0003	1221	8	0	0	8	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0004	1221	7	0	2	5	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0005	1221	4	0	0	4	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0006	1221	1	0	0	0	0	1	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0009	1221	1	0	1	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	c0010	1221	1	0	0	0	1	0	copy fasta	LHX2	chr9	124006768	124038301
LHX3_chr9_136191250_136210128	1/1	c0001	1194	429	91	84	193	15	44	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0002	1194	2	0	0	2	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0003	1194	2	0	0	2	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0004	1194	1	0	0	0	1	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0005	1194	1	0	0	0	0	1	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0006	1194	1	1	0	0	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0007	1162	1	0	0	0	0	1	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	LHX3	chr9	136191250	136210128
LHX4_chr1_180225264_180283984	1/1	c0001	1173	215	68	45	73	9	18	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0002	1173	142	10	17	84	8	23	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0003	1173	15	12	2	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0004	1173	7	0	1	6	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0005	1173	7	0	4	1	1	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0006	1173	6	0	0	6	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0007	1173	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0008	1173	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0010	1173	1	0	0	0	0	1	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984
LHX4_chr1_180225264_180283984	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	LHX4	chr1	180225264	180283984