JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIAT1_chr17_405325_419666	0/0	c0017	1392	3	0	1	2	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0018	1302	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0019	1272	2	0	2	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0020	1272	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0021	1302	2	2	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0022	1242	2	0	0	2	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0023	1242	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0024	1272	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0025	1272	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0026	1272	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0027	1272	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0028	1242	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0029	1333	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0030	1242	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0031	1242	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0032	1272	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0033	1302	1	0	1	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0034	1302	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0035	1272	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0036	1243	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0037	1242	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0038	1242	1	0	0	0	1	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0039	1212	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0040	1272	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0041	1394	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0042	1302	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0043	1242	1	0	0	0	1	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	c0044	1332	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIFR_chr5_38469668_38561646	1/0	c0001	3294	250	56	47	111	12	23	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0002	3294	48	1	1	46	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/1	c0003	3294	36	10	15	2	0	8	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0004	3294	10	1	3	6	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0005	3294	4	0	0	0	0	4	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0006	3294	3	0	0	3	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0007	3294	3	3	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0008	3294	3	3	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0009	3294	3	0	1	0	0	2	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0010	3294	2	2	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0011	3294	2	2	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0012	3294	2	0	0	0	0	2	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0013	3294	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0014	3294	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0015	3294	1	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0016	3294	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0017	3294	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0018	3294	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0019	3294	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	c0020	3294	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIF_chr22_30235453_30251759	1/1	c0001	609	417	92	78	183	18	44	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	c0002	609	5	5	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759