JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIMCH1_chr4_41533157_41705044	0/0	c0016	4404	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0017	4404	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0018	4404	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0019	4404	2	0	0	2	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0020	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0021	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0022	4404	1	0	0	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0023	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0024	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/1	c0025	4404	1	0	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0026	4404	1	0	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0027	4404	1	0	0	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0028	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0029	4404	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0030	4404	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0031	4404	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0032	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0033	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0034	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0035	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0036	4404	1	1	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0037	4404	1	0	0	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0038	4404	1	0	0	1	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMD1_chr3_45589751_45691341	0/0	c0001	2031	249	50	42	126	10	21	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	1/1	c0002	2031	83	26	26	16	4	9	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0003	2031	6	4	2	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0004	2031	4	1	3	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0005	2031	4	4	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0006	2031	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0007	2031	2	2	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0008	2031	2	0	0	2	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0009	2031	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0010	2031	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0011	2031	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0012	2031	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0013	2031	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	c0014	2031	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD2_chr17_63690888_63705125	1/1	c0001	384	389	91	70	176	14	36	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	c0002	384	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	c0003	384	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	c0004	384	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIME1_chr20_63731664_63744103	1/0	c0001	888	373	85	75	155	13	44	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/1	c0002	888	12	0	5	3	1	2	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	c0003	888	4	4	0	0	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	c0004	888	3	3	0	0	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	c0005	888	1	0	0	1	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	c0006	888	1	0	0	1	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIMK1_chr7_74078804_74127525	1/1	c0001	1944	275	73	48	107	15	30	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0002	1944	6	0	0	6	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0003	1944	4	4	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525