JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIPT1_chr2_99149967_99168137	0/0	c0008	1122	1	1	0	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0009	1122	1	0	1	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT2_chr11_74485519_74498724	0/1	c0001	696	214	37	34	109	10	23	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0002	696	106	38	16	36	2	14	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0003	696	74	6	16	43	2	7	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	1/0	c0004	696	18	16	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0005	696	5	0	4	1	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0006	696	1	1	0	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0007	696	1	0	1	0	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LIPT2_chr11_74485519_74498724	0/0	c0008	696	1	0	0	1	0	0	copy fasta	LIPT2	chr11	74485519	74498724
LITAFD_chr16_8877351_8890350	0/1	c0001	219	379	78	67	177	13	43	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	1/0	c0002	219	14	13	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0003	219	3	0	3	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0004	219	3	3	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0005	219	3	0	2	0	1	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0006	219	1	0	0	1	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0007	219	1	1	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0008	230	1	0	0	0	0	1	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	c0009	219	1	1	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAF_chr16_11542722_11591919	1/0	c0001	486	370	86	61	167	13	42	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/1	c0002	486	34	5	6	14	3	5	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	c0003	486	5	3	1	1	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	c0004	486	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	c0005	486	1	0	0	0	0	1	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	c0006	486	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LIX1L_chr1_145928423_145963017	0/1	c0001	1014	276	84	62	96	6	27	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	1/0	c0002	1014	36	5	1	25	0	4	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	c0003	1014	1	0	1	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	c0004	1014	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	c0005	1014	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	LIX1L	chr1	145928423	145963017
LIX1_chr5_97086867_97147611	1/1	c0001	849	350	82	68	146	16	36	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	c0002	849	4	4	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	c0003	849	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	c0004	849	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LKAAEAR1_chr20_64078376_64089398	1/1	c0001	585	79	12	17	22	0	26	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	c0002	585	20	6	1	10	0	3	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	c0003	585	1	1	0	0	0	0	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	c0004	585	1	1	0	0	0	0	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	c0005	585	1	0	0	0	0	1	copy fasta	LKAAEAR1	chr20	64078376	64089398
LLCFC1_chr7_142934484_142945868	0/1	c0001	369	272	95	60	70	12	34	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	c0002	369	3	2	1	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	c0003	369	1	0	1	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	c0004	369	1	1	0	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLGL1_chr17_18220635_18249875	0/1	c0001	3195	309	62	54	149	8	35	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	1/0	c0002	3195	98	17	17	50	2	11	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0003	3195	8	0	0	8	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0004	3195	5	5	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0005	3195	5	2	3	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0006	3195	3	2	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875