JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC3B_chr3_26617772_26715776	0/0	c0004	780	1	0	0	1	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	c0005	780	1	0	0	1	0	0	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3C_chr17_39922732_39949999	1/1	c0001	828	355	76	53	177	12	35	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0002	828	24	9	7	0	5	3	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0003	828	6	0	0	6	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0004	828	4	0	3	0	1	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0005	828	3	2	0	0	0	1	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0006	828	3	2	1	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0007	828	1	0	1	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0008	828	1	0	0	1	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0009	828	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0010	828	1	0	0	1	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0011	828	1	0	0	1	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0012	828	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0013	828	1	0	0	0	0	1	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0014	828	1	1	0	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3C_chr17_39922732_39949999	0/0	c0015	828	1	0	1	0	0	0	copy fasta	LRRC3C	chr17	39922732	39949999
LRRC3_chr21_44450510_44467196	1/1	c0001	774	334	69	63	147	12	41	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0002	774	39	7	8	22	0	2	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0003	774	22	0	9	13	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0004	774	9	8	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0005	774	7	7	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0006	774	5	0	0	2	0	3	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0007	774	3	3	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0008	774	2	0	2	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0009	774	2	0	0	2	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0010	774	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0011	774	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	c0012	774	1	0	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC40_chr1_70139805_70210579	1/1	c0001	1809	305	53	62	145	9	34	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0002	1809	3	0	0	0	0	3	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0003	1809	2	0	2	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0004	1809	2	0	0	0	0	2	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0005	1809	2	2	0	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0006	1809	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0007	1809	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0008	1809	1	0	0	0	0	1	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0009	1809	1	0	0	0	1	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0010	1809	1	1	0	0	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	c0011	1809	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC41_chr1_46272462_46308616	1/1	c0001	2439	278	85	61	99	11	20	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0002	2439	84	1	6	55	3	19	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0003	2439	2	0	0	2	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0004	2439	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0005	2439	1	0	0	1	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0006	2439	1	0	1	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0007	2439	1	0	0	0	0	1	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0008	2439	1	0	0	1	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	c0009	2439	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC42_chr1_53941350_53973168	1/1	c0001	1287	206	18	41	111	7	27	copy fasta	LRRC42	chr1	53941350	53973168