JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC42_chr1_53941350_53973168	0/0	c0002	1287	95	65	9	15	3	3	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0003	1287	5	4	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0004	1287	3	0	0	3	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0005	1287	3	3	0	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0006	1287	2	1	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0007	1287	1	0	0	1	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	c0008	1287	1	1	0	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC43_chr12_122178123_122208471	0/0	c0001	1971	133	0	11	103	6	13	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/1	c0002	1971	107	25	26	33	9	13	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0003	1971	41	10	21	7	0	3	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	1/0	c0004	1971	31	15	4	4	0	7	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0005	1971	9	1	2	6	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0006	1971	8	8	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0007	1971	6	4	0	2	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0008	1971	5	5	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0009	1971	3	2	1	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0010	1971	3	3	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0011	1992	3	0	2	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0012	1971	3	0	3	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0013	1983	3	3	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0014	1971	3	3	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0015	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0016	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0017	1971	2	0	0	2	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0018	1971	2	0	0	0	0	2	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0019	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0020	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0021	1971	2	0	0	0	0	2	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0022	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0023	1971	2	0	0	0	0	2	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0024	1971	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0025	1971	2	0	2	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0026	1971	1	0	0	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0027	1971	1	0	0	1	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0028	1971	1	1	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0029	1971	1	0	1	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0030	1971	1	0	0	1	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0031	1971	1	1	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0032	1971	1	1	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0033	1971	1	0	0	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0034	1992	1	0	1	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	c0035	1971	1	0	0	1	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC45_chr17_82018305_82036151	1/1	c0001	2013	371	90	66	159	12	42	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0002	2013	7	0	0	7	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0003	2013	5	1	2	0	2	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0004	2013	3	0	0	3	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0005	2013	3	0	0	3	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0006	2013	2	0	0	0	0	2	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0007	2013	2	1	1	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0008	2013	2	0	0	2	0	0	copy fasta	LRRC45	chr17	82018305	82036151