JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRTM1_chr3_54913231_54933059	0/0	c0011	1038	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0012	1038	1	0	1	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0013	1038	1	0	0	0	0	1	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0014	1038	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	c0015	1038	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM2_chr12_1815565_1841753	1/1	c0001	1113	435	98	80	196	15	44	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0002	1113	14	0	4	4	1	5	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0003	1113	2	0	0	2	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0004	1113	2	0	2	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0005	1113	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0006	1113	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0007	1113	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0008	1113	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0009	1113	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0010	1113	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0011	1113	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0012	1113	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	c0013	1113	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRWD1_chr7_102459984_102478168	1/0	c0001	1944	170	41	25	90	0	13	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0002	1944	137	24	24	62	12	15	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0003	1944	46	0	10	20	2	14	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/1	c0004	1944	14	5	6	0	0	2	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0005	1944	13	13	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0006	1944	11	0	6	5	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0007	1944	6	0	2	0	2	2	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0008	1944	5	5	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0009	1944	2	0	0	0	2	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0010	1944	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0011	1944	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0012	1944	2	0	0	2	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0013	1944	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0014	1944	1	0	0	0	0	1	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0015	1944	1	1	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0016	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0017	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0018	1944	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0019	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0020	1944	1	1	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0021	1944	1	0	0	0	0	1	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0022	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0023	1944	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0024	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0025	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0026	1944	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0027	1944	1	0	1	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0028	1944	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	c0029	1944	1	0	0	1	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LSAMP_chr3_115797374_116450487	0/0	c0001	1017	90	48	19	14	1	8	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	c0002	1017	11	0	7	2	1	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	c0003	1017	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487