JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LSS_chr21_46183446_46233774	0/0	c0023	2199	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0024	2199	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0025	2199	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0026	2199	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0027	2199	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LST1_chr6_31581277_31593909	0/1	c0001	294	419	81	77	196	18	46	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	c0002	294	1	0	0	1	0	0	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	c0003	294	1	0	0	1	0	0	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	c0004	294	1	0	1	0	0	0	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	c0005	294	1	1	0	0	0	0	copy fasta	LST1	chr6	31581277	31593909
LTA4H_chr12_95995753_96040587	1/1	c0001	1836	326	59	60	150	15	40	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0002	1836	18	18	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0003	1836	9	9	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0004	1836	5	4	1	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0005	1836	4	3	1	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0006	1836	1	1	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	c0007	1836	1	0	0	0	1	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA_chr6_31567289_31579324	0/0	c0001	618	153	36	29	66	7	15	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0002	618	145	18	27	81	6	13	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/1	c0003	618	88	22	16	32	5	12	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0004	618	9	0	5	4	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0005	618	5	0	0	5	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0006	618	2	0	0	0	0	2	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0007	618	1	0	0	1	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0008	618	1	1	0	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0009	618	1	0	1	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0010	618	1	1	0	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	c0011	618	1	0	0	1	0	0	copy fasta	LTA	chr6	31567289	31579324
LTB4R2_chr14_24305140_24317038	1/1	c0001	1077	373	66	67	176	16	46	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0002	1077	8	8	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0003	1077	8	8	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0004	1077	7	0	0	7	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0005	1077	2	2	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0006	1077	2	2	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0007	1077	1	0	0	0	0	1	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0010	1077	1	0	1	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0011	1077	1	0	0	1	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0012	1063	1	0	0	0	0	1	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0013	1077	1	1	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	c0014	1077	1	0	0	1	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R_chr14_24306502_24323036	1/0	c0001	1059	220	68	56	53	11	31	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/1	c0002	1059	145	8	9	107	4	16	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0003	1059	45	9	5	31	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0004	1059	6	0	0	5	1	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0005	1059	3	3	0	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0006	1059	3	3	0	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0007	1059	1	1	0	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0008	1059	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036