JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAB21L3_chr1_116106399_116143149	0/0	c0006	1089	2	0	0	0	0	2	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0007	1089	2	0	0	0	1	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0008	1089	2	2	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0009	1089	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0010	1089	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L4_chr2_240881048_240901156	0/0	c0001	1344	137	13	32	60	10	22	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/1	c0002	1344	106	20	22	47	6	10	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0003	1344	67	26	7	25	1	8	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0004	1344	60	2	3	55	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0005	1344	20	0	0	16	0	4	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0006	1344	10	10	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0007	1344	7	7	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0008	1344	6	5	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	1/0	c0009	1344	5	1	0	0	1	2	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0010	1344	4	0	1	3	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0011	1344	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0012	1344	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0013	1344	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0014	1344	3	0	0	3	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0015	1344	2	1	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0016	1344	2	0	2	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0017	1344	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0018	1344	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0019	1344	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0020	1344	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0021	1344	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0022	1344	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0023	1344	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	c0024	1344	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MACC1_chr7_20129655_20222384	1/1	c0001	2559	83	39	15	13	4	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0002	2559	79	11	16	39	3	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0003	2559	57	13	16	13	5	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0004	2559	33	2	3	19	1	8	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0005	2559	16	0	8	6	1	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0006	2559	10	8	2	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0007	2559	8	5	2	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0008	2559	4	0	0	4	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0009	2559	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0010	2559	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0011	2559	2	0	0	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0012	2559	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0013	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0014	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0015	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0016	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0017	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0018	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0019	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0020	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0021	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384