JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MACC1_chr7_20129655_20222384	0/0	c0022	2559	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0023	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0024	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0025	2559	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0026	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0027	2559	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	c0028	2559	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACF1_chr1_39199695_39492138	0/0	c0001	22668	47	7	11	25	1	3	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0002	22668	36	2	9	20	1	4	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0003	22668	17	0	2	13	1	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0004	22668	14	14	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0005	22668	10	5	1	0	0	4	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/1	c0006	22668	7	2	2	0	2	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0007	22668	6	0	0	5	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0008	22668	6	5	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0009	22668	5	5	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0010	22668	5	4	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0011	22668	4	4	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0012	22668	3	0	0	2	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0013	22668	3	3	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0014	22668	3	3	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0015	22668	3	0	0	3	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0016	22668	3	0	0	3	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0017	22668	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0018	22668	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0019	22668	2	0	0	0	0	2	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0020	22668	2	0	1	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0021	22668	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0022	22668	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0023	22668	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0024	22668	2	1	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0025	22668	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0026	22668	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0027	22668	2	0	0	2	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0028	22668	2	0	1	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0029	22668	2	2	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0030	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0031	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0032	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0033	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0034	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0035	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0036	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0037	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0038	22668	1	0	0	0	0	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0039	22668	1	0	0	0	1	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0040	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0041	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0042	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0043	22668	1	0	0	0	0	1	copy fasta	MACF1	chr1	39199695	39492138