JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBOAT1_chr6_20094684_20217469	0/0	c0006	1488	2	0	1	0	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0007	1488	1	0	0	1	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0008	1488	1	0	0	0	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0009	1488	1	0	0	1	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0010	1488	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0011	1488	1	0	1	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT2_chr2_8847690_9008684	1/1	c0001	1563	150	72	25	27	4	20	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	c0002	1563	7	4	2	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	c0003	1563	3	0	1	0	0	2	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	c0004	1563	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT4_chr8_30126671_30149665	0/1	c0001	1308	240	39	40	120	12	28	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	1/0	c0002	1308	81	19	5	50	2	4	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0003	1308	23	21	2	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0004	1308	13	5	2	1	2	3	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0005	1308	7	6	1	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0006	1308	4	4	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0007	1308	3	1	0	2	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0008	1308	1	0	1	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0009	1308	1	0	1	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0010	1308	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0011	1308	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0012	1308	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0013	1308	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0014	1308	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0015	1308	1	0	0	1	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	c0016	1308	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT7_chr19_54168415_54194580	0/0	c0001	1419	276	54	68	109	16	29	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/1	c0002	1419	51	26	5	11	1	7	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0003	1420	26	4	9	11	0	2	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0004	1420	7	3	1	3	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0005	1419	3	3	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0006	1419	2	2	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0007	1419	2	0	0	2	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0008	1419	2	0	0	0	0	2	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0009	1419	1	0	0	1	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0010	1419	1	0	0	1	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0011	1419	1	0	0	0	1	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	c0012	1419	1	0	1	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBP_chr18_76973833_77137783	1/1	c0001	915	277	63	54	111	13	34	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0002	915	91	14	15	57	1	4	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0003	915	9	8	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0004	915	5	5	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0005	915	4	0	0	1	0	3	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0006	915	3	0	0	2	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0007	915	2	0	0	2	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0008	915	2	1	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0009	915	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0010	915	1	0	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	c0011	915	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783