JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MDC1_chr6_30694807_30722281	0/0	c0027	6270	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0028	6270	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0029	6270	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0030	6270	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0031	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0032	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0033	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0034	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0035	6270	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0036	6270	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0037	6270	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0038	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0039	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDFIC2_chr3_70189479_70317638	0/1	c0001	570	185	50	48	58	6	22	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	1/0	c0002	570	182	40	19	97	4	21	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	c0003	570	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	c0004	570	1	0	1	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	c0005	570	1	0	0	0	0	1	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC_chr7_114917094_115024917	0/1	c0001	741	321	70	68	134	13	35	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	1/0	c0002	741	5	4	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0003	741	3	3	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0004	741	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0005	741	1	0	0	0	1	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0006	741	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0007	741	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	c0008	741	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFI_chr6_41633468_41659244	1/1	c0001	741	426	79	73	211	17	44	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0002	741	17	2	10	0	1	4	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0003	741	10	10	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0004	741	3	3	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0005	741	2	2	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0006	741	1	0	1	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0007	741	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0008	741	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	c0009	741	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDGA1_chr6_37625679_37702883	0/1	c0001	2868	225	36	37	119	5	27	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0002	2868	62	2	14	34	4	8	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	1/0	c0003	2868	39	25	8	0	2	3	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0004	2868	20	0	8	1	5	6	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0005	2868	12	12	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0006	2868	6	4	2	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0007	2868	6	6	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0008	2868	4	0	0	0	1	3	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0009	2868	3	3	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0010	2868	3	0	0	3	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0011	2868	2	0	0	2	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0012	2868	2	1	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0013	2868	2	0	0	2	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0014	2868	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0015	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883