JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MDH2_chr7_76043106_76072508	0/0	c0010	1017	1	1	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDK_chr11_46376669_46388801	1/1	c0001	432	273	96	46	96	6	27	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	c0002	432	36	2	10	13	2	9	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	c0003	432	1	0	0	1	0	0	copy fasta	MDK	chr11	46376669	46388801
MDM1_chr12_68289566_68337362	1/1	c0001	2175	125	15	18	72	5	13	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0002	2175	115	50	19	38	2	6	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0003	2175	78	4	14	43	4	13	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0004	2175	53	0	22	24	3	4	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0005	2175	6	4	1	0	0	1	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0006	2175	6	6	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0007	2175	4	4	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0008	2175	4	4	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0009	2175	2	2	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0010	2175	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0011	2175	1	0	0	0	0	1	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0012	2175	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0013	2175	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0014	2175	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0015	2175	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0016	2175	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0017	2175	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	c0018	2175	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM2_chr12_68803177_68850544	1/1	c0001	1494	348	65	66	167	16	32	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	c0002	1494	34	19	8	5	0	2	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	c0003	1494	3	2	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	c0004	1494	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	c0005	1494	1	0	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	c0006	1494	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM4_chr1_204511406_204563120	1/1	c0001	1473	346	71	40	176	13	44	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0002	1473	8	0	8	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0003	1473	3	0	3	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0004	1473	3	2	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0005	1473	3	0	2	0	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0006	1473	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0007	1473	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0008	1473	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0009	1473	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0010	1473	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	c0012	1473	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDN1_chr6_89637498_89824794	0/0	c0001	16791	52	6	12	33	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0002	16791	38	3	9	18	3	5	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0003	16791	25	5	2	9	1	8	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/1	c0004	16791	21	6	5	3	2	4	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0005	16791	18	0	6	5	2	5	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0006	16791	14	1	4	5	2	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0007	16791	12	0	7	5	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0008	16791	11	1	5	0	3	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0009	16791	10	10	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794