JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED12_chrX_71113596_71147450	0/0	c0014	6534	1	0	1	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0015	6534	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0016	6552	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0017	6533	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0018	6535	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0019	6534	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0020	6534	1	1	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0021	6534	1	1	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0022	6534	1	0	0	0	0	1	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0023	6532	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0024	6534	1	1	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0025	6536	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED13L_chr12_115953576_116282693	1/0	c0001	6633	160	32	25	82	5	15	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/1	c0002	6633	52	4	7	25	6	9	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0003	6633	9	9	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0004	6633	9	0	4	0	4	1	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0005	6633	5	5	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0006	6633	2	0	2	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0007	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0008	6633	1	0	1	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0009	6633	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0010	6633	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0011	6633	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0012	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0013	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0014	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0015	6633	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0016	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0017	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0018	6633	1	0	1	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0019	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0020	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0021	6633	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0022	6633	1	0	0	0	0	1	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	c0023	6633	1	0	0	0	1	0	copy fasta	MED13L	chr12	115953576	116282693
MED13_chr17_61937605_62070278	0/1	c0001	6525	182	28	31	91	5	26	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0002	6525	62	0	1	59	0	2	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0003	6525	40	24	8	2	1	5	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0004	6525	8	8	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0005	6525	7	7	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0006	6525	5	4	1	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0007	6525	3	3	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0008	6525	2	0	0	0	0	2	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0009	6525	2	2	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0010	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0011	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	1/0	c0012	6525	1	0	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0013	6525	1	0	0	0	0	1	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0014	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0015	6525	1	0	1	0	0	0	copy fasta	MED13	chr17	61937605	62070278