JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED13_chr17_61937605_62070278	0/0	c0016	6525	1	0	1	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0017	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0018	6525	1	0	1	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0019	6525	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0020	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0021	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0022	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0023	6525	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	c0024	6525	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED14_chrX_40643305_40740542	1/1	c0001	4365	174	28	37	89	7	11	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0002	4365	59	26	3	23	0	7	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0003	4365	4	4	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0004	4365	3	3	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0005	4365	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0006	4365	1	1	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0007	4365	1	1	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0008	4365	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0009	4365	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0010	4365	1	0	0	0	0	1	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0011	4357	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0012	4365	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0013	4365	1	0	0	0	0	1	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0014	4365	1	1	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	c0015	4366	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED15_chr22_20502610_20592619	1/0	c0001	2367	190	57	40	61	9	22	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0002	2367	61	0	7	49	2	3	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0003	2370	50	9	8	20	4	9	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0004	2367	8	7	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0005	2364	6	3	1	1	0	1	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0006	2367	2	0	2	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0007	2367	2	0	2	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0008	2367	2	0	0	2	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0009	2358	2	2	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0010	2355	2	2	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0011	2364	2	2	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0012	2364	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0013	2379	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0014	2370	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0015	2370	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0016	2367	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0017	2367	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0018	2367	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0019	2367	1	0	0	0	1	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0020	2364	1	0	0	0	0	1	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0021	2358	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0022	2367	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0023	2367	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0024	2361	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	c0025	2367	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED16_chr19_862963_898187	1/0	c0001	2634	15	3	6	4	0	1	copy fasta	MED16	chr19	862963	898187