JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEGF6_chr1_3482951_3616508	0/0	c0105	4626	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0106	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0107	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0108	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0109	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0110	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0111	4626	1	0	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0112	4626	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0113	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0114	4626	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0115	4626	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0116	4626	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0117	4626	1	0	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0118	4626	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0119	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0120	4626	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0121	4626	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0122	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0123	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0124	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0125	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0126	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0127	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0128	4626	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF8_chr19_42320635_42383765	1/1	c0001	8538	88	20	32	15	6	13	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0002	8538	18	0	5	8	1	4	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0003	8538	14	14	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0004	8538	7	6	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0005	8538	5	4	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0006	8538	3	3	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0007	8538	3	3	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0008	8538	2	0	0	0	0	2	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0009	8538	2	0	0	2	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0010	8538	2	1	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0011	8538	2	0	0	2	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0012	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0013	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0014	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0015	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0016	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0017	8538	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0018	8538	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0019	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0020	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0021	8538	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0022	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0023	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0024	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0025	8538	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0026	8538	1	0	0	0	1	0	copy fasta	MEGF8	chr19	42320635	42383765